PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490697.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 515aa    MW: 57338.3 Da    PI: 4.4615
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.31.8e-1081405021374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+ L++c eav+ ++l+la+al+  ++e+a ++  p++++a+yf+eAL +r+++   +l ++++ s  +     ++l+ ++  +e+ P+l+f++
  XP_016490697.1 140 LVKILMACGEAVQRNNLNLADALVRLIREHAVSQFGPIKKVATYFAEALDQRIHG--MNLEDIMEFSCYT-----DNLMQMR-SHEIRPYLEFAY 226
                     6789***************************************************..5555555555554.....2333332.369********* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      taN+aIl+a+++++rvHiiDf+++qG QW+aL+q +a Rp+gpp +R+Tg+gsp+++++++l++++++La+fA+ +gv+fef+ +v+++l+d++
  XP_016490697.1 227 STANRAILDAFANSSRVHIIDFSLNQGPQWLALMQDFALRPGGPPAFRLTGIGSPQPDNTNALRQLEWKLAEFADIFGVEFEFREIVVHSLADVD 321
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl..eaklpresee 281
                     +  L+++p   E +aVn++++l++ll  ++++e+    vL+ +k++ Pk+v+++e+ea++  + F++rf +a +yys++fdsl  ++++ ++++ 
  XP_016490697.1 322 IAILDIRPsnYEQVAVNSIFELQHLLYTPGEVEK----VLNSIKEMHPKIVTIIEEEANR--SVFMDRFNDAWSYYSKMFDSLenSESIDQHNSG 410
                     *******9999***************99999999....*******************987..9********************433456666688 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ + +e+lg++i n+vace     er etl++Wr ++++aGF+pv+l+ +++ qa ++l+ ++  dgyrve+++g+l+l W++rpL+s+S+W+
  XP_016490697.1 411 DSRLVHECLGQQINNMVACELGT--ERVETLSEWRVKMNSAGFNPVQLGPSTYLQATMILALFQnRDGYRVEQNDGCLTLSWHGRPLISTSVWQ 502
                     88888899************997..9*******************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.254114481IPR005202Transcription factor GRAS
PfamPF035146.3E-106140502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSVGNLSMDT FREDGESFVS NTDAIINGTS DISGLTLSLI SDPNIPNSSN SSTSADDHLQ  60
QISTAAGGGG DMIVSGATSR IYNSIDFRAF SRNVNAACNN YSDKVAEEGS ESSNRMRSRD  120
GLELCLGLSI GSEAVNEELL VKILMACGEA VQRNNLNLAD ALVRLIREHA VSQFGPIKKV  180
ATYFAEALDQ RIHGMNLEDI MEFSCYTDNL MQMRSHEIRP YLEFAYSTAN RAILDAFANS  240
SRVHIIDFSL NQGPQWLALM QDFALRPGGP PAFRLTGIGS PQPDNTNALR QLEWKLAEFA  300
DIFGVEFEFR EIVVHSLADV DIAILDIRPS NYEQVAVNSI FELQHLLYTP GEVEKVLNSI  360
KEMHPKIVTI IEEEANRSVF MDRFNDAWSY YSKMFDSLEN SESIDQHNSG DSRLVHECLG  420
QQINNMVACE LGTERVETLS EWRVKMNSAG FNPVQLGPST YLQATMILAL FQNRDGYRVE  480
QNDGCLTLSW HGRPLISTSV WQLNYAAESR LVSYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-521405024375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0488710.0EU048871.1 Nicotiana tabacum isolate SSAP gp91tr retrotransposon Tnt1, flanking sequence and LTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490697.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ7Y1B61e-147GAI_SOLLC; DELLA protein GAI
TrEMBLA0A1S4BP730.0A0A1S4BP73_TOBAC; DELLA protein GAI-like
STRINGXP_009590520.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1696445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-128GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]