PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490642.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 367aa MW: 41149.9 Da PI: 7.7056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	206	308	14	55
HHHHHHHHHHHCTSCCC................................................................TTS-STCHHHHHHH CS HLH 14 driNsafeeLrellPkas.............................................................kapskKlsKaeiLekA 47 dr+ s+f+ L+el+ ++s ap +K + a++L++A XP_016490642.1 206 DRMSSGFAGLQELIHNPSnssnknpvvsnnigvstkakrlscsaenpaqevskkpritsqsstpmlkxlghrisalhrlVAPFGKTDTASVLTEA 300 79999999999999998889999999999999999999999999999999999999999999999999999999999999999********** PP HHHHHHHH CS HLH 48 veYIksLq 55 + YI+ Lq XP_016490642.1 301 IGYIQFLQ 308 *****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.918	258	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-8	274	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.64E-4	276	311	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-5	276	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDSRNLYHLH QLQQQQLAGY PLFTGVQALH DWNPSMTSEE EYYYKGEMKR IFQNNISSEE 60 LWKSSSSIDT FPLMNSSMFQ NGHQSSNEQL DYKNSKGYIS NDYFLKMKDT NGLSNSLFKE 120 SYFKQEQHHV FDLNENLLSE DHSYMNNAKT CIGFSGLAAA AATPNYISSH LEHSDFQDLK 180 KLGFNGLNFK NSIGDHSTSF GHFCTDRMSS GFAGLQELIH NPSNSSNKNP VVSNNIGVST 240 KAKRLSCSAE NPAQEVSKKP RITSQSSTPM LKXLGHRISA LHRLVAPFGK TDTASVLTEA 300 IGYIQFLQDQ ILTLSMPYAK SSKGKLHQIN LKDSSIDMKG QAVQDLKSRG LCLVPMSFSS 360 YITYSCD

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDSRNLYHLH QLQQQQLAGY PLFTGVQALH DWNPSMTSEE EYYYKGEMKR IFQNNISSEE  60
LWKSSSSIDT FPLMNSSMFQ NGHQSSNEQL DYKNSKGYIS NDYFLKMKDT NGLSNSLFKE  120
SYFKQEQHHV FDLNENLLSE DHSYMNNAKT CIGFSGLAAA AATPNYISSH LEHSDFQDLK  180
KLGFNGLNFK NSIGDHSTSF GHFCTDRMSS GFAGLQELIH NPSNSSNKNP VVSNNIGVST  240
KAKRLSCSAE NPAQEVSKKP RITSQSSTPM LKXLGHRISA LHRLVAPFGK TDTASVLTEA  300
IGYIQFLQDQ ILTLSMPYAK SSKGKLHQIN LKDSSIDMKG QAVQDLKSRG LCLVPMSFSS  360
YITYSCD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016490642.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A1S4BP27	0.0	A0A1S4BP27_TOBAC; transcription factor bHLH110-like
STRING	XP_009624505.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13443	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-29	bHLH family protein