PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 206aa MW: 22931.5 Da PI: 7.5002 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.1 | 7.3e-55 | 25 | 120 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +e d+flPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk yl+kyre+ege XP_016490537.1 25 KELDKFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNKYRETEGE 119 788*******************************************************************************************9 PP NF-YB 97 k 97 k XP_016490537.1 120 K 120 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.6E-51 | 21 | 128 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.63E-40 | 28 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-27 | 30 | 94 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.4E-19 | 58 | 76 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 61 | 77 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.4E-19 | 77 | 95 | No hit | No description |
PRINTS | PR00615 | 3.4E-19 | 96 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MTGKRSQNSP VGSPLSGNVS DNSSKELDKF LPIANVSRIM KKSLPANAKI SKEAKETVQE 60 CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVGPLKGYL NKYRETEGEK 120 NIMARNEEPC EPTSYNNIIT SSNSTTSYNN IIGVHGHGHV TKFSKRPEFI QSFNNDNFAQ 180 SFGDYGRVNV YGENLTSATN LHGVEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-45 | 25 | 115 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-45 | 25 | 115 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787043.1 | 1e-153 | PREDICTED: nuclear transcription factor Y subunit B-3-like isoform X1 | ||||
Refseq | XP_016490537.1 | 1e-153 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 9e-60 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A1S4BNT7 | 1e-152 | A0A1S4BNT7_TOBAC; nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A1U7X867 | 1e-152 | A0A1U7X867_NICSY; nuclear transcription factor Y subunit B-3-like isoform X1 | ||||
STRING | XP_009787043.1 | 1e-152 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 9e-62 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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