PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490468.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 301aa MW: 33519.6 Da PI: 8.2137

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	310.4	6.1e-95	11	301	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlsep 117 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+a+ erd++++al l e s++ +++g ++ g+k+i + qq ++ XP_016490468.1 11 TYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNAAIQERDDAIAALRLGESSINdnnvVPDSPGNDTETGAKHIYNQQQ-MHK 104 569******************************************************99998887633333445556666666664444.666 PP GAGA_bind 118 qledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................skaekksid 195 +++ a + +e + + ++++e+k++kk +r+k+ +++k+ k ++++ ++ +++ +++ ++ + + + XP_016490468.1 105 TIAEAAHGSTEDPTAG----YLKGTDTSEAKNPKKVRRPKESRHNKQAKIPRQGKIGAESLNMQVISTSsddwvnlqeldsdkegdMQLTSWKDN 195 7777777743333222....223445555666666666666666666666666666666666666653346778899999999999555544569 PP GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++La++Gydls p+DLkdhWA XP_016490468.1 196 LGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAGQGYDLSVPLDLKDHWA 290 ******************************************************************************************* PP GAGA_bind 291 kHGtnkfvtir 301 kHGtn++ t++ XP_016490468.1 291 KHGTNRYSTLK 301 *****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.6E-106	2	301	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.5E-83	10	301	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MMDHNNFTIK TYMAIMAERD AAIRERNMAL EERKRAFAER DMAMLQRDAA LAERNAAIQE 60 RDDAIAALRL GESSINDNNV VPDSPGNDTE TGAKHIYNQQ QMHKTIAEAA HGSTEDPTAG 120 YLKGTDTSEA KNPKKVRRPK ESRHNKQAKI PRQGKIGAES LNMQVISTSS DDWVNLQELD 180 SDKEGDMQLT SWKDNLGLNQ INFDESAMPV PVCSCTGTPQ PCYKWGHGGW QSACCTTTIS 240 MYPLPQISNK RYSRVGGRKM SGGAFSKLLN RLAGQGYDLS VPLDLKDHWA KHGTNRYSTL 300 K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982301	0.0	FJ982301.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312785.1	0.0	barley B recombinant-like protein D
Refseq	XP_009789611.1	0.0	PREDICTED: barley B recombinant-like protein D
TrEMBL	A0A1U7XIZ5	0.0	A0A1U7XIZ5_NICSY; barley B recombinant-like protein D
TrEMBL	H1ZN84	0.0	H1ZN84_TOBAC; GAGA-binding transcriptional activator
STRING	XP_009789611.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	3e-83	basic pentacysteine 6