PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490378.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 290aa    MW: 33047.2 Da    PI: 6.0702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20145195255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ +l+g
  XP_016490378.1 145 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTALEAAKAYDRAAFELRG 195
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-32144204IPR001471AP2/ERF domain
CDDcd000186.57E-32144203No hitNo description
SMARTSM003803.8E-37145209IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22145205IPR016177DNA-binding domain
PfamPF008477.0E-15145195IPR001471AP2/ERF domain
PROSITE profilePS5103224.144145203IPR001471AP2/ERF domain
PRINTSPR003671.3E-10146157IPR001471AP2/ERF domain
PRINTSPR003671.3E-10169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MALPQENCTT LDLIRQHLLD DNVFMEHYCP QPILYSQSSS SSESLNSIAS ELNNDTFSFE  60
PTLNYADTAQ SSNLDISTFF NNSKTEFDCF EFETKPNVLA ARISPNSPKQ TSFKERKPSL  120
NIAIPLKHQE VVQKVEKSNE SEKKHYRGVR QRPWGKFAAE IRDPNRKGTR VWLGTFDTAL  180
EAAKAYDRAA FELRGSKAIV NFPLEVANFK QEFNNEIRPL VNSSRKRVRE TVNEEQLVIN  240
KEMKIEEERV PTAPLTPSIW SAIWDSGDGK GIFEVPPLSP HMAYSQLVMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-31144206163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-31141206166ATERF1
3gcc_A7e-31141206166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankTOBBY4C0.0D38125.1 Nicotiana tabacum EREBP-4 mRNA for ethylene-responsive element binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776184.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_016490378.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW481e-166ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A1S4BNB10.0A0A1S4BNB1_TOBAC; ethylene-responsive transcription factor 5-like
TrEMBLA0A1U7WND60.0A0A1U7WND6_NICSY; ethylene-responsive transcription factor 5-like
STRINGXP_009776184.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-56ERF family protein