PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490372.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 455aa MW: 50451.8 Da PI: 6.3916

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.7e-05	347	384	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L XP_016490372.1 347 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 384 5566777888888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	335	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-4	345	388	No hit	No description
SuperFamily	SSF47459	9.95E-11	345	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	349	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD 60 DSVVLQELPK HHQQPHDSTL QMLGIGLSSS SISSTPDWNH TMMHGNERAD SSYPTILQED 120 LNSSLNYRQE TGVDCSHELG KNFSTITEDS SNNSYKQVNH QDFTLGMNPI TSSTNTDQST 180 VISSSFPMNS SFSNYPSALL QTLFDNDPPP HQQQPQQQSL FTNNNQPMNF PVSLNYRPNL 240 NDHFSPSLPK FPPLLRPSLP KQTPSSFPFT DPTSLNNMRG NLLPSMHSQL LLQSPTFHEK 300 SSVPNNSAKS DVEGFRESRA KKSGNSEPAF KRPRMETPSP LPTFKVRKEK LGDRITAIQQ 360 LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKTGS PPLHQQSADK VKEQEGSKQD 420 LRSRGLCLVP ISSTFPVATE TTTDFWTPNF GGTFR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD  60
DSVVLQELPK HHQQPHDSTL QMLGIGLSSS SISSTPDWNH TMMHGNERAD SSYPTILQED  120
LNSSLNYRQE TGVDCSHELG KNFSTITEDS SNNSYKQVNH QDFTLGMNPI TSSTNTDQST  180
VISSSFPMNS SFSNYPSALL QTLFDNDPPP HQQQPQQQSL FTNNNQPMNF PVSLNYRPNL  240
NDHFSPSLPK FPPLLRPSLP KQTPSSFPFT DPTSLNNMRG NLLPSMHSQL LLQSPTFHEK  300
SSVPNNSAKS DVEGFRESRA KKSGNSEPAF KRPRMETPSP LPTFKVRKEK LGDRITAIQQ  360
LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKTGS PPLHQQSADK VKEQEGSKQD  420
LRSRGLCLVP ISSTFPVATE TTTDFWTPNF GGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	8e-57	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764035.1	0.0	PREDICTED: transcription factor bHLH112-like
Refseq	XP_016490372.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1S4BNE2	0.0	A0A1S4BNE2_TOBAC; transcription factor bHLH112-like
TrEMBL	A0A1U7VQ73	0.0	A0A1U7VQ73_NICSY; transcription factor bHLH112-like
STRING	XP_009764035.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	5e-55	bHLH family protein