PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490281.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 389aa    MW: 45053 Da    PI: 8.1909
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.64.4e-31171442128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevls 94 
                     p G+rF P ++el+  yL  kv+g+ ++    i+++diy+ +P +Lp  ++++e+ +yfF++r++ky++g r+ r+t+  +gyWk t k +++++
  XP_016490281.1  17 PLGYRFVPDNQELL-LYLLCKVKGEIIPS-GLIQDADIYERNPFQLP-GMDTKEEYTYFFTRRERKYPNGFRADRSTRdgKGYWKITNKLTPIFA 108
                     78************.8999********99.89***************.677888899******************9987789************* PP

             NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +++   g k++Lv+y  + + ++  kt+W+mhe +l
  XP_016490281.1 109 AGNLPLGKKNVLVYYlkTPKGQNDIKTNWIMHELEL 144
                     99999**********4323555566********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3413167IPR003441NAC domain
PROSITE profilePS5100537.22316169IPR003441NAC domain
PfamPF023653.4E-1517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSGEKEEGSH QYMKKYPLGY RFVPDNQELL LYLLCKVKGE IIPSGLIQDA DIYERNPFQL  60
PGMDTKEEYT YFFTRRERKY PNGFRADRST RDGKGYWKIT NKLTPIFAAG NLPLGKKNVL  120
VYYLKTPKGQ NDIKTNWIMH ELELHKSLFS RHAPEKKFNN FIVCRIYERE KRKRDEQRNV  180
VNSLIEPKQV MNHNNGQPLR STKRKFKTNN TIIKSQNPQN VGMKLNYLYN GHKLQATAAS  240
DFGQTKTSSA DIMSTIMANP IADYHPPQVV QHTHVTGDQN VYLSCNNNDN ILSVFPRQDI  300
YLCGEQSTNS GLHLVKTEGN AINDQRLEGS TSQHMKRDEP IPLVPENDCW PPSEEFWDGL  360
PDMPPMDDFS NYMDLLDFDL DQTQPKTLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-241717018166NO APICAL MERISTEM PROTEIN
1ut4_B2e-241717018166NO APICAL MERISTEM PROTEIN
1ut7_A2e-241717018166NO APICAL MERISTEM PROTEIN
1ut7_B2e-241717018166NO APICAL MERISTEM PROTEIN
3swm_A3e-241717021169NAC domain-containing protein 19
3swm_B3e-241717021169NAC domain-containing protein 19
3swm_C3e-241717021169NAC domain-containing protein 19
3swm_D3e-241717021169NAC domain-containing protein 19
3swp_A3e-241717021169NAC domain-containing protein 19
3swp_B3e-241717021169NAC domain-containing protein 19
3swp_C3e-241717021169NAC domain-containing protein 19
3swp_D3e-241717021169NAC domain-containing protein 19
4dul_A2e-241717018166NAC domain-containing protein 19
4dul_B2e-241717018166NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490281.10.0PREDICTED: NAC transcription factor 25-like
TrEMBLA0A1S4BN360.0A0A1S4BN36_TOBAC; NAC transcription factor 25-like
STRINGXP_009774531.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1786734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.14e-29NAC domain containing protein 102