PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490268.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 263aa    MW: 29735.1 Da    PI: 7.7243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1786135356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  XP_016490268.1  86 YRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYRTAEMAARAHDVAALAIKGH 135
                     9****887.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3185142IPR001471AP2/ERF domain
PROSITE profilePS5103223.27585142IPR001471AP2/ERF domain
SMARTSM003802.7E-3685148IPR001471AP2/ERF domain
CDDcd000186.83E-3286144No hitNo description
PRINTSPR003671.7E-108697IPR001471AP2/ERF domain
PfamPF008475.8E-1286135IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2186143IPR016177DNA-binding domain
PRINTSPR003671.7E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKDLEEQTNL DTLAHYHDFS TSFSSSNGLN SPSTITTKIS IEYKVKKISK RVKEFNCKGT  60
DHIGGTDENR KRKKKEGDDK HPTYSYRGVR KRNWGKWVSE IREPRKKSRI WLGTYRTAEM  120
AARAHDVAAL AIKGHSAYLN FPYLANQLPR PASTSPKDIQ IAAAKAAATT FPEEEMKSRA  180
ESSHEISSPM EPHSSCSSTD LSSENNQEFV KSPSTDKDDT FFNLPDLSFN EVDQIGRYSD  240
PNSTWLQVGA DVGFWLEEPF LFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16861461576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRKK
26975RKRKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628141.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
RefseqXP_016490268.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ73e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S4BN000.0A0A1S4BN00_TOBAC; ethylene-responsive transcription factor ERF038-like
STRINGXP_009628141.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]