PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490251.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31844.4 Da    PI: 6.1049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1789142356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  XP_016490251.1  89 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 142
                     4557899*********************************************99 PP
2HD-ZIP_I/II128.72.5e-4188179192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el 
  XP_016490251.1  88 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNKKLHSELL 179
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1886146IPR009057Homeodomain-like
SMARTSM003898.2E-1887148IPR001356Homeobox domain
PROSITE profilePS5007116.1888144IPR001356Homeobox domain
CDDcd000868.62E-1689145No hitNo description
PfamPF000467.8E-1589142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1891151IPR009057Homeodomain-like
PRINTSPR000311.2E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5124140IPR000047Helix-turn-helix motif
PfamPF021831.8E-15144184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLFSSTGTMA FAAPETNSVD FRNHEAANDD LPSSFPSHVF PSSCPPHQEF QGISPLLMRR  60
AMSFDHNQES RVEDDMSDDD GSSHLLGEKK RRLNLEQVKA LERSFEMGNK LEPERKMQLA  120
RALGLKPRQI AIWFQNRRAR CKTKQLEKDY EILKRQCDKL KADNDALKTQ NKKLHSELLS  180
LGNRESAGGT PPMLFNLNKE NEGCNWNNNG SGDENNSTID VNLGTTTRTS STNSPLNNHD  240
VFPTAYKVDQ TVNEEGFCNM FTNVEDQTNF WPLPVQQHFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490251.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X2
SwissprotQ004661e-64HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1S4BN060.0A0A1S4BN06_TOBAC; homeobox-leucine zipper protein HAT7-like isoform X2
STRINGXP_009775432.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.17e-57homeobox 3