PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490205.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 30846.9 Da    PI: 5.908
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien  nrqvtfskRr+g+lKKA+ELSvLCdaevaviifsst kl+e+ss
  XP_016490205.1  9 KLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTSKLFEFSS 59
                    569**********************************************96 PP
2K-box59.61.3e-20971889100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     l+++ +++ q+e++ Lk+e+++L+ +q +llG+dL+ L l eL+ Le+qL+++l  i+++K+ell++q+e+++++e+++ +e ++Lr+++ee
  XP_016490205.1  97 LQKHVQKQEQKEVDSLKDELSKLKIKQMRLLGKDLNGLGLSELRLLEHQLNEGLLAIKDRKEELLIQQLENSRMQEERAVSESETLRRQVEE 188
                     667778899********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
CDDcd002651.65E-39278No hitNo description
SuperFamilySSF554556.67E-32275IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-1498186IPR002487Transcription factor, K-box
PROSITE profilePS5129711.942102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KANELSVLCD AEVAVIIFSS TSKLFEFSST  60
SMQQTLSRYN RCVASTEISA IERKSEDNKQ PQPQAQLQKH VQKQEQKEVD SLKDELSKLK  120
IKQMRLLGKD LNGLGLSELR LLEHQLNEGL LAIKDRKEEL LIQQLENSRM QEERAVSESE  180
TLRRQVEELR GLFPLSASLP PPYLEYHPLE KKYPIIKEGE ESLDSDTACE DGVDDEDSNT  240
TLQLGLPTIG RKRKKPEQES PSSNSENQVG SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22169169MEF2C
5f28_B3e-22169169MEF2C
5f28_C3e-22169169MEF2C
5f28_D3e-22169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250254RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705260.0AY370526.1 Petunia x hybrida MADS-box protein 9 (PMADS9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787834.10.0PREDICTED: agamous-like MADS-box protein AGL15
RefseqXP_016490205.10.0PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A1S4BMX10.0A0A1S4BMX1_TOBAC; agamous-like MADS-box protein AGL15
TrEMBLA0A1U7XLK30.0A0A1U7XLK3_NICSY; agamous-like MADS-box protein AGL15
STRINGXP_009787834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-57AGAMOUS-like 15