PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 413aa MW: 46287 Da PI: 7.031 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.8e-33 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_016490150.1 43 KPRLKWTADLHERFIEAVNQLGGADKATPKSVLKLMGIPGLTLYHLKSHLQKYRL 97 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.539 | 40 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-31 | 41 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.02E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-23 | 43 | 98 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-10 | 45 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.5E-25 | 142 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MYHHHQAANM HPSTRMSFPE RHLFLQAGNV NGDSGLVLST DAKPRLKWTA DLHERFIEAV 60 NQLGGADKAT PKSVLKLMGI PGLTLYHLKS HLQKYRLSKN LHGQANISGA NKSASIEKIC 120 ESTGTPMSNI PSIGPQQNNN IPISEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA 180 VLEKAQETLG TQNLGTIGLE AAKDQLSDLV SKVSNQCLNS AFSEIKELSG FHTPQTQATP 240 PADCSMDSCL TSSERPLRDL REMHNSQIGL RPLNFGPCTK DIENETRLQQ TELRWRDDLK 300 ENRKLFPKMD GDSEKEFTKE TSWSNLSMNI GLQGGKRNVS STYFDGRLNG INADSKLFHQ 360 SSERSDSMKP EKQISSQEYE LPYFAPKLDL NTDDQTDAAS SCKQLDLNGF SWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-20 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-21 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619713.1 | 0.0 | PREDICTED: myb-related protein 2-like isoform X2 | ||||
Refseq | XP_016490150.1 | 0.0 | PREDICTED: uncharacterized protein LOC107809956 isoform X2 | ||||
Swissprot | Q9SQQ9 | 1e-126 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S4BMS3 | 0.0 | A0A1S4BMS3_TOBAC; uncharacterized protein LOC107809956 isoform X2 | ||||
STRING | XP_009619712.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-128 | G2-like family protein |
Publications ? help Back to Top | |||
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