PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016489866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31806 Da PI: 6.1617 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++ ++++G g+W++ ar+ g++Rt+k+c++rw++yl XP_016489866.1 14 RGSWTVEEDFTLINHIALHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_016489866.1 67 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 110 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.712 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.51E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.70E-7 | 87 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDHHVNEDNM DFKRGSWTVE EDFTLINHIA LHGEGRWNSL ARCAGLKRTG KSCRLRWLNY 60 LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK 120 CDVNSKQFKD TLRYLWMPRL VERIQASSNS AAATNNNNNN NDSNNNNNNS STSVTQENSN 180 VTASSENSMG TQVSPVSDIS DCCYNNYPIN QSDYGEFLIS PTGYFQNGAL DFRTVNDNNQ 240 QNIISQWMEG TEDVSDNLWN IEDMLFLQQQ LNNDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 9 | 108 | 22 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246582 | 1e-51 | AC246582.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-26i13 map 1, complete sequence. | |||
GenBank | AC246642 | 1e-51 | AC246642.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-41f18 map 1, complete sequence. | |||
GenBank | HG975440 | 1e-51 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-51 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. | |||
GenBank | HG975524 | 1e-51 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620712.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_016489866.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_018631979.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 2e-88 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A1S4BLU7 | 0.0 | A0A1S4BLU7_TOBAC; transcription factor MYB108-like | ||||
STRING | XP_009620712.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 6e-84 | myb domain protein 78 |
Publications ? help Back to Top | |||
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