PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016489848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 358aa MW: 39302.9 Da PI: 6.5132 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 170 | 220 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge XP_016489848.1 170 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 220 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.57E-34 | 169 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 170 | 228 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-38 | 170 | 233 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 170 | 228 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.235 | 170 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 171 | 182 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 171 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 193 | 209 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MASAIDIYSN NSSVFSDPLS EELMKALEPF MKGASCSSSI SPSLSPSSSS SPSTSSSSSS 60 SSCFYPFGEP NLYTDFCTIP SLSFNPMGHV AETGSIGLNH LTPSQIFQIQ AQIQFQNQQQ 120 QQLLLQQQQS LGLLPTTPTY SKNLNSMNYL GLKPVPMKQS GGAIQKPTKL YRGVRQRHWG 180 KWVAEIRLPK NRTRLWLGTF DTAEEAALAY DKAAYKLRGE FARLNFPHLR HQLNNELSDF 240 KPLHSSVDAK LQAICQNLVN SDGLSSNNNT DSKPRKSKKA ASKLNSGSVQ DCPENVNVKI 300 EATSSSSPTQ SEESSSSAVT SSPESDITFL DFIEPSFDES ENFFLPKYPS VEIDWAAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 169 | 227 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-22 | 169 | 227 | 4 | 63 | ATERF1 |
3gcc_A | 2e-22 | 169 | 227 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN649467 | 0.0 | FN649467.1 Nicotiana benthamiana mRNA for transcription factor DREB2a. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016489848.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A1S4BLT5 | 0.0 | A0A1S4BLT5_TOBAC; ethylene-responsive transcription factor RAP2-13-like | ||||
STRING | XP_009798155.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-47 | related to AP2 4 |