PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016489842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 436aa MW: 50225.6 Da PI: 5.8149 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.7 | 3.9e-31 | 271 | 325 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LHerF+e+v++LGG++kAtPk+il+lm+++gLtl+hvkSHLQkYR XP_016489842.1 271 KTRIRWSEDLHERFLECVNRLGGADKATPKQILNLMDLEGLTLDHVKSHLQKYRN 325 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.585 | 268 | 328 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-28 | 269 | 326 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.23E-16 | 269 | 325 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-25 | 271 | 326 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 275 | 324 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.6E-20 | 355 | 402 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 436 aa Download sequence Send to blast |
MSIQRFFTQD RAHQTNEFSS DYTLEFPKIS AQDLVAQQQY SSHMGFCFQP EKGRQQQHQQ 60 TCNLPIATAS SNTIISFFGS PTSAFFATER CLGLTQYDNQ DNTSQHMINN NDLNQDHTSQ 120 LMIDNYDLNQ DNTSQLINNY DIQLSSYDPQ QSRNGFLTDS IAQPEPDFQH NISLSSFIRP 180 EFSTSQPLRR QYSFADVSEK ERMLHLKNEL LGEFDPSYRR HPSIPFDGNQ NYSISHDFCG 240 CPLENMRQQC ASPSLTSHNS ASSGVSNKHS KTRIRWSEDL HERFLECVNR LGGADKATPK 300 QILNLMDLEG LTLDHVKSHL QKYRNAKHIP ESTERKSEKR NSPDNVTEID NKTGIEIKEA 360 LKMQLEVQRC LHEQLETQRT LQMRIEEQAK KLKMIFDQQQ KTNRVLLERQ NSNISSLADP 420 STAHDDVEIL VVEELE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-20 | 271 | 328 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC244286 | 1e-49 | AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence. | |||
GenBank | HG975522 | 1e-49 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016489842.1 | 0.0 | PREDICTED: uncharacterized protein LOC107809695 isoform X2 | ||||
TrEMBL | A0A1S4BLX6 | 0.0 | A0A1S4BLX6_TOBAC; uncharacterized protein LOC107809695 isoform X2 | ||||
STRING | XP_009629806.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-60 | G2-like family protein |