PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489841.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 437aa    MW: 50227.6 Da    PI: 5.6815
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.73.9e-31271325155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rW+++LHerF+e+v++LGG++kAtPk+il+lm+++gLtl+hvkSHLQkYR 
  XP_016489841.1 271 KTRIRWSEDLHERFLECVNRLGGADKATPKQILNLMDLEGLTLDHVKSHLQKYRN 325
                     68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.585268328IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-28269326IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16269325IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-25271326IPR006447Myb domain, plants
PfamPF002491.3E-7275324IPR001005SANT/Myb domain
PfamPF143796.6E-20356403IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSIQRFFTQD RAHQTNEFSS DYTLEFPKIS AQDLVAQQQY SSHMGFCFQP EKGRQQQHQQ  60
TCNLPIATAS SNTIISFFGS PTSAFFATER CLGLTQYDNQ DNTSQHMINN NDLNQDHTSQ  120
LMIDNYDLNQ DNTSQLINNY DIQLSSYDPQ QSRNGFLTDS IAQPEPDFQH NISLSSFIRP  180
EFSTSQPLRR QYSFADVSEK ERMLHLKNEL LGEFDPSYRR HPSIPFDGNQ NYSISHDFCG  240
CPLENMRQQC ASPSLTSHNS ASSGVSNKHS KTRIRWSEDL HERFLECVNR LGGADKATPK  300
QILNLMDLEG LTLDHVKSHL QKYRNAKHIP ESTETGKSEK RNSPDNVTEI DNKTGIEIKE  360
ALKMQLEVQR CLHEQLETQR TLQMRIEEQA KKLKMIFDQQ QKTNRVLLER QNSNISSLAD  420
PSTAHDDVEI LVVEELE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-20271328259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442861e-49AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9755221e-49HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489841.10.0PREDICTED: uncharacterized protein LOC107809695 isoform X1
TrEMBLA0A1S4BLS80.0A0A1S4BLS8_TOBAC; uncharacterized protein LOC107809695 isoform X1
STRINGXP_009629806.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-60G2-like family protein