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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016489725.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | NAC | ||||||||
| Protein Properties | Length: 628aa MW: 72488.5 Da PI: 6.1237 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 181.8 | 1.7e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv +yLk+k++gkk+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v
XP_016489725.1 6 LPPGFRFHPTDEELVAYYLKRKINGKKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99
79****************************.99***************6434555777************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
s + + vg+kktLv+y+grap+g +tdWvmheyrl
XP_016489725.1 100 S-EMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
9.9999***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 2.48E-62 | 4 | 155 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 60.953 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 5.6E-30 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 628 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING KKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS EMRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDEGECEV SNGLQDGYAL CRVIKRSLNG PKKGDDVNYG SDRSSEGRCD 180 HHHMEMPSSF ATPTPSDDNW NMQYLSNQPF AFNNTTHPIP NYGTLPYPPS KVNIALECAR 240 LQHRFALPPL EIQDFPQVGY VDTKMPQSSF IQSTNQTDIV EEILSVAQAS QNLINQDLSW 300 GGNSCAPVDN FSFLPPNNNQ IHDLDSFHFI EQLKEDQNVR SIGIGDFGED FKSDRMVENL 360 RWIGMSDRDL EKTFLEDYKT VPIENVSAIQ REENQFQGEY SGHHNNLSGF NETETNNFSI 420 GFGNDKLLDD GNMTDGLSNS PSFEVYEKIE VNHGFFIATR QTAKTFYHQL TPSTTLRIHR 480 NLVTVHDLPL YIGKFSDSIA IPKERNFYDN FVKKVTRPWT TTMRTLVSMV AFLHTFFWIC 540 FGECLDEKGS QLEDKRGVSV NEECLMEREE KKKAQDYKWD YCYKQNKFPI VDKEEEKYCN 600 VAVEKKWPYL TLVVALSTIW LHHIVPSF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 4e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 5e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3ulx_A | 4e-54 | 2 | 133 | 11 | 140 | Stress-induced transcription factor NAC1 |
| 4dul_A | 4e-54 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-54 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC226509 | 2e-83 | AC226509.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0144P17, complete sequence. | |||
| GenBank | HG975441 | 2e-83 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
| GenBank | HG975514 | 2e-83 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009625360.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
| Refseq | XP_016489725.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
| TrEMBL | A0A1S4BLJ4 | 0.0 | A0A1S4BLJ4_TOBAC; NAC domain-containing protein 86-like | ||||
| STRING | XP_009625360.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1495 | 23 | 48 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-141 | NAC domain containing protein 28 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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