PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489689.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 170aa    MW: 19893 Da    PI: 10.4618
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.7e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g++yeys+
  XP_016489689.1  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRVYEYSN 59
                    79***********************************************95 PP
2K-box90.14.1e-3079158685
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                        ++e +a+ +qqe++kL+++i+ +q+++Rhl+Ge+++sL+++eL+qLe++Le++l++iRskK+e++l+++e+lqk+  
  XP_016489689.1  79 AYTTQELNAQFYQQESKKLRQQIQLMQNTNRHLVGEGVSSLNVRELKQLENRLERGLTRIRSKKHEMILAETENLQKRVI 158
                     33388999*********************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.74161IPR002100Transcription factor, MADS-box
CDDcd002658.05E-42273No hitNo description
SuperFamilySSF554557.98E-33280IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2283157IPR002487Transcription factor, K-box
PROSITE profilePS5129713.23787170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFST RGRVYEYSNT  60
NIKATIERYK KATTETSSAY TTQELNAQFY QQESKKLRQQ IQLMQNTNRH LVGEGVSSLN  120
VRELKQLENR LERGLTRIRS KKHEMILAET ENLQKRVIFL KLVCFFLVDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-22169169Myocyte-specific enhancer factor 2B
1tqe_Q9e-22169169Myocyte-specific enhancer factor 2B
1tqe_R9e-22169169Myocyte-specific enhancer factor 2B
1tqe_S9e-22169169Myocyte-specific enhancer factor 2B
6c9l_A9e-22169169Myocyte-specific enhancer factor 2B
6c9l_B9e-22169169Myocyte-specific enhancer factor 2B
6c9l_C9e-22169169Myocyte-specific enhancer factor 2B
6c9l_D9e-22169169Myocyte-specific enhancer factor 2B
6c9l_E9e-22169169Myocyte-specific enhancer factor 2B
6c9l_F9e-22169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX818521e-166X81852.1 P. hybrida mRNA for FBP11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489689.11e-120PREDICTED: agamous-like MADS-box protein AGL11
SwissprotA0A217EJJ05e-89AG11S_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A1S4BLE31e-119A0A1S4BLE3_TOBAC; agamous-like MADS-box protein AGL11
STRINGXP_009615311.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.41e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  2. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  3. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  4. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]