PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489448.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 251aa    MW: 28099.3 Da    PI: 9.6155
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-32116172158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  XP_016489448.1 116 DGPIYVNAKQYHGIMRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-36114175IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.974115175IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-28118172IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23118140IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860120140IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-23149172IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKSLDPDLQG ETLRLTHSII NSQDEMTTSE KTNSQDQCAS SEYVHDERYG RDMQAQIKPA  60
LFSSQNEVAH STGFSPFGYS DPYMTGLYTA YGPQAFPQMM GIAPTRVPLP LDLAEDGPIY  120
VNAKQYHGIM RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ  180
SDPNSYPTNA ISSQDSVERE NSTSAFSSVR KDVNNGVSFQ QQPDHRAFGV SSHMAITMQG  240
NGNQQRAPVV R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-22116185274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755244e-54HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489448.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_016489449.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_016489451.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLA0A1S4BKM90.0A0A1S4BKM9_TOBAC; nuclear transcription factor Y subunit A-7-like
STRINGXP_009761217.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-42nuclear factor Y, subunit A3