PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489410.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 259aa    MW: 29218.7 Da    PI: 10.1907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
   XP_016489410.1 14 KGPWTSEEDQKLIDYIQKHGCGNWRLLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.13.6e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+e +++++  lG++ W++Ia+ ++ gRt++++k++w++y
   XP_016489410.1  67 RGKFSFEEEETIIQLHSILGNK-WSAIAASLP-GRTDNEIKNYWNTY 111
                      89********************.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.527961IPR017930Myb domain
SuperFamilySSF466896.97E-3211108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002495.0E-171461IPR001005SANT/Myb domain
CDDcd001671.79E-121661No hitNo description
PROSITE profilePS5129425.62262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2665116IPR009057Homeodomain-like
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1667111IPR001005SANT/Myb domain
CDDcd001676.20E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRIPCCEKN GLKKGPWTSE EDQKLIDYIQ KHGCGNWRLL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SFEEEETIIQ LHSILGNKWS AIAASLPGRT DNEIKNYWNT YIRKKLMRMG  120
IDPVTHSPRL DLLDFSSILN SYNSSQVNIS RLMGLQPMVN REVLKILSTF LLSSQYTVKP  180
PESVDQKNIQ KSQRSSLVQL SQTQTATRDI PCIPFSSEAQ PMQQVPAASG GVRIVNGSSL  240
EVERLLKLTS SGAIAPAKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448702e-37AC244870.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30c5 map 10, complete sequence.
GenBankAC2547682e-37AC254768.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-39i21 map 10, complete sequence.
GenBankHG9755222e-37HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783632.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_016489410.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9LDR81e-101MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1S4BKN20.0A0A1S4BKN2_TOBAC; transcription factor MYB39-like
TrEMBLA0A1U7WUP30.0A0A1U7WUP3_NICSY; transcription factor MYB39-like
STRINGXP_009783632.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-103MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]