PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489211.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 317aa    MW: 35491.6 Da    PI: 6.872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
   XP_016489211.1 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding35.72e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  + +  G++ W+ Ia  ++ gRt++++k++w++
   XP_016489211.1  69 GEFSDEEDRVICSLYASIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.745962IPR017930Myb domain
SuperFamilySSF466897.94E-2711109IPR009057Homeodomain-like
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-241569IPR009057Homeodomain-like
CDDcd001671.01E-81662No hitNo description
PROSITE profilePS5129421.67463117IPR017930Myb domain
SMARTSM007171.5E-1067115IPR001005SANT/Myb domain
PfamPF002498.6E-1069111IPR001005SANT/Myb domain
CDDcd001672.06E-770113No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC SLYASIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLMGF  120
VSSSQKIRPF HQNQHQITTG YNNYYPQILP YSSPSTTLTT LEAYKYSNNN TFPCYETIPT  180
IPSSSFLNTA AAASCTSGIT ASTSPILQIQ ESNYVGPTTT TSSDGSAEYE NLDFHSYIYN  240
GVIGNEDDQS NSKFLIEGGG KPINGNSCYV EQQNPLDYSS LEEIKQLISS NNNNNVTCNS  300
NLFLDENKIE EKVMMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2285910.0JQ228591.1 Nicotiana tabacum ntrax mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780529.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_016489211.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4BK220.0A0A1S4BK22_TOBAC; transcription factor RAX2-like
TrEMBLA0A1U7X0X50.0A0A1U7X0X5_NICSY; transcription factor RAX2-like
STRINGXP_009780529.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-78myb domain protein 36