PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489108.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 220aa    MW: 24178.4 Da    PI: 8.7903
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-391676262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg rkn k+s
  XP_016489108.1 16 EQEHLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGTLRNIPVGGGFRKNTKRS 76
                    57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-27970IPR003851Zinc finger, Dof-type
PfamPF027017.2E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0682074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQDPSIYTQI KPQFPEQEHL KCPRCDSPNT KFCYYNNYNL SQPRHFCKSC RRYWTKGGTL  60
RNIPVGGGFR KNTKRSSSSS NKKISSSTTS SSVLSSKPDQ ITNPKPEPFG IPAIPDFDQN  120
SNRVIDMSNG QFSALLESNG PQFGNLMEAL NPNNNGSNLQ LGEFARNQNT NSGSGSDGTR  180
QNGNNTYLGD QNGGDSNNCW NGGSNGWPDL AIYTPGSNFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489108.11e-160PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821552e-43DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A1S4BJK81e-159A0A1S4BJK8_TOBAC; dof zinc finger protein DOF1.7-like
STRINGXP_009615092.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-38DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]