PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016489054.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 361aa MW: 38638.6 Da PI: 8.164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016489054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	7.9e-11	294	339	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++I+ Lq XP_016489054.1 294 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 339 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.954	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	291	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.77E-11	292	343	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-13	293	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-8	294	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-12	294	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MYPSSTSSSS QNSMSHTTTA GGGSNGGGGL TRYGSAPGAF LTTAVESVIG ANNHDFNLHG 60 SHHQHLGPSR YYSPNMTSSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG GGGCGVLPAA 120 NSTTPLVRHS SSPARFLNQL AAAAGDTVSM GRGSYNSKGV ADSSRGITRL NSQLSFTRQE 180 VLSQIAEENE DVEGTSTENG HRKSTHSYAT ASSFAMGSWE DNNSIMFSVT PSKRAKHISN 240 DIVNGLDDGE TQFQFGLSQT ALEMSSMDRL LHIPEDSVPC KIRAKRGCAT HPRSIAERER 300 RTRISGKLKK LQDLVPNMDK QTSYADMLDL AVQHIRTLQD QVQNLNIELE NCKCGCKKSS 360 Q

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MYPSSTSSSS QNSMSHTTTA GGGSNGGGGL TRYGSAPGAF LTTAVESVIG ANNHDFNLHG  60
SHHQHLGPSR YYSPNMTSSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG GGGCGVLPAA  120
NSTTPLVRHS SSPARFLNQL AAAAGDTVSM GRGSYNSKGV ADSSRGITRL NSQLSFTRQE  180
VLSQIAEENE DVEGTSTENG HRKSTHSYAT ASSFAMGSWE DNNSIMFSVT PSKRAKHISN  240
DIVNGLDDGE TQFQFGLSQT ALEMSSMDRL LHIPEDSVPC KIRAKRGCAT HPRSIAERER  300
RTRISGKLKK LQDLVPNMDK QTSYADMLDL AVQHIRTLQD QVQNLNIELE NCKCGCKKSS  360
Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU123519	0.0	EU123519.1 Nicotiana tabacum MYC mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016489054.1	0.0	PREDICTED: transcription factor bHLH128-like isoform X2
Swissprot	Q8H102	7e-77	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1S4BJN9	0.0	A0A1S4BJN9_TOBAC; transcription factor bHLH128-like isoform X2
STRING	XP_009803686.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	7e-70	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]