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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016489002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 282aa MW: 31303.9 Da PI: 10.1223 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016489002.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 348.6 | 1.4e-106 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalverdnkll 82
mdddg + rn+gyyep+ lk +lglqlmss+ +rd+k+ r +n + + ++ +++rd +++ rd+++++ ++k+l
XP_016489002.1 1 MDDDGLNMRNWGYYEPS--LKGHLGLQLMSSVVDRDTKPfltRRENPIMLGANGMYHSRDsivpeaplshIDY-VRDSWINH--------RDKFL 84
9*****99*******99..**********************9777888*******************999999.99****99........78999 PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpiee.aaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
++ + ++++vl++t+ +s+q++++p+++++ ++ ++++++e+ +k++ +++pk++kakk kk s+++k+
XP_016489002.1 85 HMFPG--------NPYTTVLPETSASHSMQMVQQPDVTEDVR------------VNAeEPSVKNESGPSKRKTGGATPKAPKAKKLKKGSSVPKE 159
99993........357899************66665555433............33303445556666666677899***********9999988 PP
GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
+ ++ +r+k kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+Lek
XP_016489002.1 160 NGNPRV--QRAKPAKKSMDIVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEK 252
888887..79************************************************************************************* PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LaaeGy+++np+DL++hWAkHGtnkfvtir
XP_016489002.1 253 LAAEGYSFANPIDLRTHWAKHGTNKFVTIR 282
*****************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSLKG HLGLQLMSSV VDRDTKPFLT RRENPIMLGA NGMYHSRDSI 60
VPEAPLSHID YVRDSWINHR DKFLHMFPGN PYTTVLPETS ASHSMQMVQQ PDVTEDVRVN 120
AEEPSVKNES GPSKRKTGGA TPKAPKAKKL KKGSSVPKEN GNPRVQRAKP AKKSMDIVIN 180
GIDMDISGIP IPVCSCTGAP QQCYRWGCGG WQSACCTTSI SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAAEGYSF ANPIDLRTHW AKHGTNKFVT IR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982300 | 0.0 | FJ982300.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
