PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488925.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 446aa MW: 49392.8 Da PI: 6.4381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.5e-05	338	375	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L XP_016488925.1 338 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 375 5566777888888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-4	336	379	No hit	No description
SuperFamily	SSF47459	9.29E-11	336	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	340	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD 60 ESVVLQELPK HDSTLQMLGI GISSSSTSST PDWNHTMMHG NERADSSYPS ILQEDLNSSL 120 NYRQETGVDC SHELGKNFST ITEDSSRNSF KHQDFTLGMN PITSSTNTDQ STVISSSFPM 180 NSSFSNYPSA LLQTLFDNDP PPPQQQPQQQ SLFTNNNQPM NFPATLNYRP NLNDHFSPSL 240 PKFPPLLRPS LPKQTPSNFP FTNPTSLNNM RGNLLPSMHS QLLPLPTFHE KSSAPNVSAK 300 SNVEEFRESR AKKSGNSEPA FKRPRMETPS PLPTFKVRKE KLGDRITAIQ QLVSPFGKTD 360 TASVLHEAIE YIKFLHDQVN VLSTPYLKTG SPPLHQQTAD KVKEQEGSKQ DLRSRGLCLV 420 PISSTFPVAT ETTTDFWTPN FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD  60
ESVVLQELPK HDSTLQMLGI GISSSSTSST PDWNHTMMHG NERADSSYPS ILQEDLNSSL  120
NYRQETGVDC SHELGKNFST ITEDSSRNSF KHQDFTLGMN PITSSTNTDQ STVISSSFPM  180
NSSFSNYPSA LLQTLFDNDP PPPQQQPQQQ SLFTNNNQPM NFPATLNYRP NLNDHFSPSL  240
PKFPPLLRPS LPKQTPSNFP FTNPTSLNNM RGNLLPSMHS QLLPLPTFHE KSSAPNVSAK  300
SNVEEFRESR AKKSGNSEPA FKRPRMETPS PLPTFKVRKE KLGDRITAIQ QLVSPFGKTD  360
TASVLHEAIE YIKFLHDQVN VLSTPYLKTG SPPLHQQTAD KVKEQEGSKQ DLRSRGLCLV  420
PISSTFPVAT ETTTDFWTPN FGGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488925.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1S4BJ65	0.0	A0A1S4BJ65_TOBAC; transcription factor bHLH112-like
STRING	XP_009629262.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-55	bHLH family protein