PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488870.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 309aa    MW: 35134.2 Da    PI: 7.523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl
   XP_016488870.1 14 RGPWSPEEDSKLKEFIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding36.31.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
   XP_016488870.1  69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.389962IPR017930Myb domain
SuperFamilySSF466895.19E-2711109IPR009057Homeodomain-like
SMARTSM007174.7E-121364IPR001005SANT/Myb domain
PfamPF002494.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001672.59E-91662No hitNo description
PROSITE profilePS5129422.31763117IPR017930Myb domain
SMARTSM007177.3E-1167115IPR001005SANT/Myb domain
PfamPF002492.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370117IPR009057Homeodomain-like
CDDcd001671.39E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKEFID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMCL  120
KSPFFPPTQP QTFSNLFRDS YYTTTGLEHM ISSAQPNLMC TSNNMNFQLG TNQYSYFQCQ  180
DQSLMNPMQP SCSSSDGSCN PMSYGKDIKQ EEMGSCLQGQ IPTTFEETQK FTLDYGNNIG  240
GGNDHQLGTW ADQRPNGIFK NNFRSSQFQS DIEEVKELIS SSSNGSGCNN SFFFYNDENN  300
TNERGMYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-38HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488870.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4BJ100.0A0A1S4BJ10_TOBAC; transcription factor RAX2-like
STRINGXP_009616199.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-79myb domain protein 36