PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 38905 Da PI: 6.4446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl XP_016488850.1 26 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYL 73 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+e +v+++ lG++ W+ Ia++++ gRt++++k++w++ XP_016488850.1 79 RGAFSPQEEEHIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 122 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.164 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-27 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-14 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.88E-10 | 29 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.29 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.17E-10 | 81 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 81 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MRKPDHPSIL MKEKGNNNNS KAKLRKGLWS PEEDEKLMNY MLTNGQGCWS DIARNAGLLR 60 CGKSCRLRWI NYLRPDLKRG AFSPQEEEHI VHLHSILGNR WSQIAARLPG RTDNEIKNFW 120 NSTIKKRLKN NNNNNNNSNN NTSSPNTSDS SSEPRALMGG IIPMQGHDVN HVMAAICMDN 180 SSSSSNHFNP FPQLDNTNYD IIGAGLYNFP SCLGQFDGDG GVVDYDVVEN YSTMGLGSDF 240 SVPTLEGGGN KSMGGQINNN VNFSSSNITA ANIDYNSLIE KKTNGNNNQQ LMLSETSDQS 300 LKVEDYTVGF GNHHHQHHWH GESLRIGEFD WEGLLANVSS LPYLDFPVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 24 | 128 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016488850.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
TrEMBL | A0A1S4BIY8 | 0.0 | A0A1S4BIY8_TOBAC; myb-related protein 306-like | ||||
STRING | XP_009757033.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 4e-73 | myb domain protein 83 |