PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 349aa    MW: 38905 Da    PI: 6.4446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-152673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_016488850.1 26 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYL 73
                     678*****************************99************97 PP

2Myb_DNA-binding50.35.6e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+e +v+++  lG++ W+ Ia++++ gRt++++k++w++
   XP_016488850.1  79 RGAFSPQEEEHIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1642173IPR017930Myb domain
SuperFamilySSF466891.0E-2724120IPR009057Homeodomain-like
SMARTSM007171.1E-112575IPR001005SANT/Myb domain
PfamPF002498.1E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-222780IPR009057Homeodomain-like
CDDcd001678.88E-102973No hitNo description
PROSITE profilePS5129424.2974128IPR017930Myb domain
SMARTSM007175.4E-1478126IPR001005SANT/Myb domain
PfamPF002493.1E-1479122IPR001005SANT/Myb domain
CDDcd001676.17E-1081121No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2581129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRKPDHPSIL MKEKGNNNNS KAKLRKGLWS PEEDEKLMNY MLTNGQGCWS DIARNAGLLR  60
CGKSCRLRWI NYLRPDLKRG AFSPQEEEHI VHLHSILGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN NNNNNNNSNN NTSSPNTSDS SSEPRALMGG IIPMQGHDVN HVMAAICMDN  180
SSSSSNHFNP FPQLDNTNYD IIGAGLYNFP SCLGQFDGDG GVVDYDVVEN YSTMGLGSDF  240
SVPTLEGGGN KSMGGQINNN VNFSSSNITA ANIDYNSLIE KKTNGNNNQQ LMLSETSDQS  300
LKVEDYTVGF GNHHHQHHWH GESLRIGEFD WEGLLANVSS LPYLDFPVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26241285108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488850.10.0PREDICTED: myb-related protein 306-like
TrEMBLA0A1S4BIY80.0A0A1S4BIY8_TOBAC; myb-related protein 306-like
STRINGXP_009757033.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.14e-73myb domain protein 83