PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 253aa MW: 29284.7 Da PI: 8.1128 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 244.9 | 3.2e-75 | 2 | 250 | 127 | 373 |
GRAS 127 aLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak++e+++vpfe+n+++++++e++++e+L++ +gE++aVn+ ++l++llde+v XP_016488598.1 2 ILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFHVPFEYNAIATQNWENIKIEDLKLASGETVAVNCLFRLKNLLDETVV 96 69************************9******************************999*********************************** PP GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 ++s+rd+vL+l+++++P+++v + + +++++ F++rf eal +ys+lfd+++a+lpr++++r E+e+ +re++nv+aceg+er+er et+++ XP_016488598.1 97 VDSPRDAVLSLIRKMNPDIFVQAVVNGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAMNVIACEGSERVERPETYKQ 191 *********************************************************************************************** PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 W+ r ++aGFk +pl+++ +++ ++ ++ + + + +e+ +++++gWk+r + + S+W XP_016488598.1 192 WQVRYMRAGFKLLPLNQQLMQKLRCKVKGGYHRDFVFDEDGNWMLQGWKGRVVCASSCW 250 *******************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.479 | 1 | 231 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-72 | 2 | 250 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
PILIQLLSQI PGGPPKLRIT GIDLPQPGFR PAESLEQTGS RLAKYCERFH VPFEYNAIAT 60 QNWENIKIED LKLASGETVA VNCLFRLKNL LDETVVVDSP RDAVLSLIRK MNPDIFVQAV 120 VNGSYSAPFF VTRFREALFH YSTLFDMFDA TLPRDDQQRL HFEQEFYRRE AMNVIACEGS 180 ERVERPETYK QWQVRYMRAG FKLLPLNQQL MQKLRCKVKG GYHRDFVFDE DGNWMLQGWK 240 GRVVCASSCW VPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-23 | 1 | 252 | 144 | 380 | Protein SCARECROW |
5b3h_A | 5e-23 | 1 | 252 | 143 | 379 | Protein SCARECROW |
5b3h_D | 5e-23 | 1 | 252 | 143 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764837.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_016488598.1 | 0.0 | PREDICTED: scarecrow-like protein 14, partial | ||||
Swissprot | Q9XE58 | 1e-122 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S4BI92 | 0.0 | A0A1S4BI92_TOBAC; scarecrow-like protein 14 | ||||
TrEMBL | A0A1U7V9X2 | 0.0 | A0A1U7V9X2_NICSY; scarecrow-like protein 14 | ||||
STRING | XP_009764837.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-124 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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