PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488551.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 511aa    MW: 56054.5 Da    PI: 5.0418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16306352455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_016488551.1 306 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 352
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-21300369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-17305356No hitNo description
Gene3DG3DSA:4.10.280.108.2E-22306363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MNHSVPDFEM DDDYPNIPKT SGITTPSKKS PVMDEDIMEL IWQNGQIIAQ SQNQRSQTVA  60
ASAPPIFIQE DEMATWLQYP LDDSSFERDL YANFLYTTPS SSIVTAAVPP PGEIDTTTAE  120
IRPNQPPPQL RCTEGQFLHS LQNFGDFSRL PKAKSQNYTS SSGNTATVST IVDSNETPIA  180
EFSRVSDKVA PVSAGNDEGK ATTDTTTATA AETTSGRETS TTACEFTGTS SASGSRGSVS  240
ASADPPPLQP PQEAALMPAE DRKRKGRERG TEDNEEHRED AEFESADVKK QTSSSTSTKR  300
SRAAEVHNLS ERRRRDRINE KMKALQELIP RCNKSDKASM LDEAIEYLKS LQMQVQMMSM  360
GCSMVPMMYP GVPRYMPTMG MGMRMGMGTG MGMSRPMVPY PSLVPDLAMQ NAAAVAQMTP  420
RFPVPAYHLP SVPVPDPSRI RAANQPDHPM MNSLVGHNTN QPRLPNLSDP YQQYYALHQA  480
QVLPQNQRAE QPSSSNPSSR IEESPANHQT G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488551.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1S4BI580.0A0A1S4BI58_TOBAC; transcription factor PIF1-like
STRINGXP_009597633.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-54phytochrome interacting factor 3-like 5