PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 43128.5 Da PI: 4.3446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g XP_016488545.1 48 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 97 79*******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-31 | 47 | 104 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-19 | 48 | 105 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.981 | 48 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-28 | 48 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 48 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-35 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVRKRKAEGL AKTHESHDDQ GNTAAWNEMV KEADGAATQS GAQRARKRYV GVRQRPSGRW 60 VAEIKDTIQK IRVWLGTFDT AEEAARAYDE AACLLRGANT RTNFWPCSLS NSSSSSTSAL 120 PPKITNILLT RLKERNNSLA AAGDDDSSKS CSVPEIGRQQ QNQQEKFGEN VADFSDSLYT 180 EYLNYPDDHI TDNNTIANVT SWGDFIQPVN NFQSSNEEII EVGDEEEEIG EAINTDVLED 240 MESIDFNFLD EIGSCYYSPF EIAEELSTET MEHGMVYGEE TSAVSEAMRR MNYERKFSAS 300 LYAFNGITEC LKLKMKSARA TQWETSEQLS TLRNAYKKNQ EEKEKNEKCN VEEAVPFSLT 360 ENAYESELSI WSSIDLPPIC FVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 48 | 104 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-36 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621305.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Refseq | XP_016488545.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A1S4BI38 | 0.0 | A0A1S4BI38_TOBAC; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | XP_009621305.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-21 | related to AP2 11 |