PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488500.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 280aa    MW: 30402.5 Da    PI: 7.7576
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR26.91e-0830551642
             TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                    +YCeCfa+g +C+  C+C +C+N+ e+
  XP_016488500.1 30 RYCECFASGIYCDG-CNCANCHNNVEN 55
                    7*************.********9875 PP
2TCR52.31.1e-16100139140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_016488500.1 100 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 139
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.19120140IPR005172CRC domain
SMARTSM011140.00212955IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-63052IPR005172CRC domain
SMARTSM011148.4E-20100141IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-13103138IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MFEVHPLPLA YGGSIFAVSV ATMTSLSETR YCECFASGIY CDGCNCANCH NNVENEPARR  60
EAVEATLERN PHAFRPKIAS SPHGVRENRE EAGDGLVLPK HNKGCHCKKS GCLKKYCECF  120
QANILCSENC KCMDCKNFEG SQERQALFHG DHANNMAYLQ QAANAAITGA IGSSGYGSPP  180
VNKKRKAHEL FFGSMIKDPV YRLGQLQQES QIKASVSPSS LSSIPGPRFG NAAALGPSKF  240
TYRSLLADLI HPHDIKELCS VLVDYAWEAG KMLAGNHGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-272514919132Protein lin-54 homolog
5fd3_B5e-272514919132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488500.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-115TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S4BHZ20.0A0A1S4BHZ2_TOBAC; protein tesmin/TSO1-like CXC 5 isoform X1
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein