PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488485.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 363aa    MW: 40136.2 Da    PI: 9.3468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-21145194255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g
  XP_016488485.1 145 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAAIAYDEAALKFRG 194
                     7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-23145203IPR016177DNA-binding domain
PfamPF008472.6E-13145194IPR001471AP2/ERF domain
SMARTSM003801.5E-38145208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-33145203IPR001471AP2/ERF domain
PROSITE profilePS5103224.908145202IPR001471AP2/ERF domain
PRINTSPR003671.7E-11146157IPR001471AP2/ERF domain
CDDcd000181.45E-28153204No hitNo description
PRINTSPR003671.7E-11168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCILKVANFR NKANYKPIKD DEARNINVMF SGINREEEMS VMVSALTRVV RGEDKVLNQG  60
EGCDNIGAAN SGFSPSLNAI SGVVGEKRGR EEQSGQLFLS DIRSSGGESS NIRTIANNTP  120
TTESTFLYIT PTYGEGNTNH QPRRRYRGVR QRPWGKWAAE IRDPYKAARV WLGTFDTAED  180
AAIAYDEAAL KFRGSKAKLN FPENVKLLPT SSTHERSPLK LYSHQNTVGN LGFSTSTLDS  240
VENTRVSNST ISHDYTPNTL YSTTVSSFTN NYPIIHTQPN YNNTNISPQN FLNDDFQRLQ  300
PPSSLLNQLQ YLSSSSSSSS SSSSQLPFLP RMFFQGSQTT SQSSGSGFRA TSPDSTYVHP  360
SSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-26144205163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8562512e-75CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence.
GenBankHG9755162e-75HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488485.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1S4BHX80.0A0A1S4BHX8_TOBAC; ethylene-responsive transcription factor ABR1-like
STRINGXP_009629925.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-29ERF family protein