PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 167aa MW: 19003 Da PI: 9.5744 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.7 | 2.3e-40 | 46 | 123 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C+++ls+ak+yh+rhkvCe h+k+++v+v+gl+qrfCqqCsrfhe+ efDe+krsCrrrLa+hnerrrk+++ XP_016488455.1 46 CCQADKCTVNLSDAKQYHKRHKVCEYHAKSQAVVVAGLRQRFCQQCSRFHEVGEFDESKRSCRRRLAGHNERRRKTST 123 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-31 | 40 | 108 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.223 | 44 | 121 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-37 | 45 | 124 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-31 | 47 | 120 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MEDNNDLFIL ATDNDDKKKR NPSYNNRSST NNNNEKIKGS STSMRCCQAD KCTVNLSDAK 60 QYHKRHKVCE YHAKSQAVVV AGLRQRFCQQ CSRFHEVGEF DESKRSCRRR LAGHNERRRK 120 TSTTSSSSDQ CNAEVSSSRK SIIGSDTHQI INFQENAAAG YKQFQIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-37 | 41 | 120 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP260635 | 2e-64 | KP260635.1 Nicotiana tabacum SBP-box 4 (SPL4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765576.1 | 1e-121 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016488455.1 | 1e-121 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q9S758 | 4e-42 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A1S4BHV2 | 1e-120 | A0A1S4BHV2_TOBAC; squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A1U7VKT9 | 1e-120 | A0A1U7VKT9_NICSY; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_009765576.1 | 1e-120 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 2e-43 | squamosa promoter binding protein-like 5 |
Publications ? help Back to Top | |||
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