PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488450.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 338aa MW: 38303.9 Da PI: 6.2051

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	92.4	5e-29	43	133	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k++e+led+e++ +i+w++ ++sf+++d+++fa +vLpkyFkhsn++SF+ QLn YgFkkv + + e+++++F++gkk+ l++ XP_016488450.1 43 FLLKTFEMLEDPETDPFIHWTSGKTSFLITDTNKFAIEVLPKYFKHSNLSSFIYQLNNYGFKKVCSYK---------SEYANPWFRAGKKHWLKN 128 9**************************************************************999.........57************ PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 ik + XP_016488450.1 129 IKSRI 133 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-29	38	127	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.59E-29	39	131	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.1E-38	39	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-15	43	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.9E-26	43	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-15	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-15	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MENNNQENAE NGAAIIGSEG RRGGDAGRGR RLTGLRGVSP PPFLLKTFEM LEDPETDPFI 60 HWTSGKTSFL ITDTNKFAIE VLPKYFKHSN LSSFIYQLNN YGFKKVCSYK SEYANPWFRA 120 GKKHWLKNIK SRIQLSKTNK PQQGSHSSCV DPMKDNLEEE VEKLRNDNIS LKIELQKLKD 180 RQENMRVLFP TMKGCRKDTE ISNILELFVK KSKVREDSSS NDTRKRPQMV ESPDRVANSV 240 QDGIGQTSNS AGGSVSSNEQ QKEATAKNDK NREFWEKLFE DDSESQNEGA EQALNRSKAM 300 AEIEEMVESK IAMEGEALIA KAATGLDEEM EAYLQLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	5e-22	41	137	3	110	Heat shock factor protein 2
5d8l_B	5e-22	41	137	3	110	Heat shock factor protein 2
5d8l_D	5e-22	41	137	3	110	Heat shock factor protein 2
5d8l_F	5e-22	41	137	3	110	Heat shock factor protein 2
5d8l_H	5e-22	41	137	3	110	Heat shock factor protein 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488450.1	0.0	PREDICTED: heat stress transcription factor A-7a-like
TrEMBL	A0A1S4BHU7	0.0	A0A1S4BHU7_TOBAC; heat stress transcription factor A-7a-like
STRING	XP_009757521.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12970	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	3e-45	heat shock transcription factor A2