PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488440.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 200aa MW: 22296.5 Da PI: 4.3886

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	41.6	3e-13	28	122	7	96
NF-YB 7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 lP + v r++k l +++ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++epl++ l+ +r+ +++ XP_016488440.1 28 GLPKTIVRRLVKDKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLRASLEVFRQRNSK 122 5777778888887654111556666446777788999*****************************************************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-28	21	127	IPR009072	Histone-fold
SuperFamily	SSF47113	5.06E-22	28	136	IPR009072	Histone-fold
Pfam	PF00808	4.3E-8	29	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.6E-28	160	163	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAEIEKQKDK DKEKVPPAAA AVQIEQEGLP KTIVRRLVKD KLSQLSTDTD ISLLRDSLLA 60 FSESARIFIH YLSATANDIC KESKRQTINA EDVFKALEEI EFPEFIEPLR ASLEVFRQRN 120 SKRKSGSSKS TESNKKAKLK EPVENGKGKM KEQPSDTENE DGQAGEQPSD NENEEGQAAE 180 QPSDNENEDG QVEGEDSADE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-41	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488440.1	1e-142	PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBL	A0A1S4BHT5	1e-141	A0A1S4BHT5_TOBAC; DNA polymerase epsilon subunit 3-like
STRING	XP_009605311.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-29	nuclear factor Y, subunit B11