PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016488420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 332aa MW: 37226.3 Da PI: 10.2629 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.7 | 2e-15 | 62 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++Lie ++ +l+rg+l+ ++W+ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + + +st+p+f++l+ XP_016488420.1 62 CWSEAATHTLIETWGSKYVELNRGNLRHQQWREVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKTRVSQSQGRYVSTWPFFSSLN 152 7*************************************999987778889*************************9999********9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.6E-24 | 60 | 152 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MSDDDDHLAS PFSIKNSPSS SPSPSPPPPC TDDKLLALPL PPMLTPASVS ARTPVFPARE 60 DCWSEAATHT LIETWGSKYV ELNRGNLRHQ QWREVADAVN ALHGHTKKQY RTDIQCKNRI 120 DTLKKKYKIE KTRVSQSQGR YVSTWPFFSS LNPLIGVTYK VSPSPSPETF IPQRRKSPSP 180 SPATFTPQWR SSPPLLPPPL FGIPVGLRSK RPAAAMDYTV SRRNFSAMAA AAAAASEDSG 240 EEDEEGLEKS SRKRSGGVVV EGGGYRRIAE AIGRFGEIYE RVEKAKQRQM VELEKQRMQF 300 AKDLEIQRMK LIMESQLHLQ KLNRSKPHFT SR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016488419.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like isoform X1 | ||||
TrEMBL | A0A1S4BHS0 | 0.0 | A0A1S4BHS0_TOBAC; trihelix transcription factor ASIL2-like isoform X1 | ||||
STRING | XP_009603664.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58630.1 | 7e-64 | sequence-specific DNA binding transcription factors |