PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488403.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 405aa    MW: 44495.5 Da    PI: 6.5137
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.22e-09214271562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     kr++r   NR +A rs +RK  +i+eLe++v++L++e ++L  +l  l+     l +e
  XP_016488403.1 214 KRAKRIWANRQSAARSKERKMRYIAELERRVQALQTEATSLSAQLTLLQRDTNGLSAE 271
                     9*******************************************99998877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-14210274IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898212275IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-10214265No hitNo description
Gene3DG3DSA:1.20.5.1705.7E-10214268No hitNo description
PfamPF001701.4E-8214268IPR004827Basic-leucine zipper domain
CDDcd147033.53E-24215264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDKEKCVGGL MPPSGKYSLF SPSGSIFSVK SEPSGSSNLP PLGPVPASEL KANQFSHDIS  60
RMPDNPPKNL GHRRAHSEIL TLPDDISFDS DLGVVGGLDG PSLSDETEED FLSMYLDMDK  120
FNSSSATSSF QVGESSLGSL QAPAMGFTAS RIDNVTDAVS EKPRVRHQHS QSMDGSTTIK  180
PERLMSGGED PSSAETKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYIAEL  240
ERRVQALQTE ATSLSAQLTL LQRDTNGLSA ENNELKLRLQ TMEQQVHLQD ALNDALKEEI  300
QHLKVLTNQG IANAGPMMNF PASNNGGNQQ FYSNNHAIHA LLTAQQLQQL QVHSHKQQHQ  360
FQHHQLHQLQ QQQQQEQQLQ QAGDMKLRSS SSSAQNDHAS DNGMD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488403.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-144POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1S4BHP50.0A0A1S4BHP5_TOBAC; probable transcription factor PosF21
STRINGXP_009605235.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-139bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]