PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488182.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 198aa MW: 22221.5 Da PI: 4.4342

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.7	1.4e-13	24	120	5	96
NF-YB 5 drflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +++lP + v r++k l +++ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++epl++ l+ +r+ + XP_016488182.1 24 QEVLPKTIVRRLVKDKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLRASLEVFRQRN 118 5688999999999976641115667764468888899*******************************************************977 PP NF-YB 95 ge 96 ++ XP_016488182.1 119 SK 120 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.2E-28	19	160	IPR009072	Histone-fold
SuperFamily	SSF47113	6.2E-22	26	134	IPR009072	Histone-fold
Pfam	PF00808	5.0E-8	27	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAEIEKQKDK EKEKLPSAPV QIEQEVLPKT IVRRLVKDKL SQLSTDTDIS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PEFIEPLRAS LEVFRQRNSK 120 RKSGSMKSAE SNKKAKLKEP VENGKAKMKE QPSDTENEDG QAGEQPSDNE NEDGQAAEHP 180 SDNENEDGQA EGEDSGDE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-41	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781709.1	1e-141	PREDICTED: DNA polymerase epsilon subunit 3
Refseq	XP_016488182.1	1e-141	PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBL	A0A1S4BH59	1e-139	A0A1S4BH59_TOBAC; DNA polymerase epsilon subunit 3-like
TrEMBL	A0A1U7X4B0	1e-139	A0A1U7X4B0_NICSY; DNA polymerase epsilon subunit 3
STRING	XP_009781709.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-29	nuclear factor Y, subunit B11