PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488144.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 326aa    MW: 36430.4 Da    PI: 4.7961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-194191155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  XP_016488144.1 41 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 91
                    6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.99E-2641104No hitNo description
PfamPF008471.5E-124191IPR001471AP2/ERF domain
SMARTSM003809.0E-2742105IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-184297IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-264298IPR001471AP2/ERF domain
PROSITE profilePS5103220.1524299IPR001471AP2/ERF domain
PRINTSPR003671.4E-84354IPR001471AP2/ERF domain
PRINTSPR003671.4E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNIIKSSTSS STNKSTKPRK NIGSNVSSNG KQNAEEQQNN CRYLGVRRRP WGRYAAEIRD  60
PNTKERHWLG TFDTAEEAAL AYDRAARSMR SNNNKSNKPI RTNFVYSDMP HGSSVTCLIS  120
PDEEYQHHLL QQQQQLLVFG QAENVPVVNY ADFSHFSISN INTSNGGEDF ALQQYYNSNY  180
GMHMEDNYRY ESNNATSTEL PPLPEDITSS GNCYYYSEES NHQTTQFPAT TAISSVSDHM  240
GYSSSNSTSL LNEMKAMSFG TNNEYQYGMT CGEAGGGGST ITTTSGTTSE SYNDFGFDDC  300
LQPLQYCSSN IMQDESNNTT LGYWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1943103667ATERF1
3gcc_A2e-1943103667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488144.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1S4BGY60.0A0A1S4BGY6_TOBAC; ethylene-responsive transcription factor LEP-like
STRINGXP_009598690.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-28ERF family protein