PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488142.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 357aa    MW: 39806.4 Da    PI: 5.3669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1973123155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  XP_016488142.1  73 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRR 123
                     6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-2473118No hitNo description
PfamPF008471.9E-1273123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2574126IPR001471AP2/ERF domain
SMARTSM003801.6E-2674145IPR001471AP2/ERF domain
PROSITE profilePS5103219.80974133IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1874125IPR016177DNA-binding domain
PRINTSPR003671.6E-87586IPR001471AP2/ERF domain
PRINTSPR003671.6E-897113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTTFKHMSQV GARRMKKFLI ESSVNIQNLI INDNIIKSST SSSTNKSTKP RKNIGSNVSS  60
NGKQNAEEQQ NNCRYLGVRR RPWGRYAAEI RDPNTKERHW LGTFDTAEEA ALAYDRAARS  120
MRRNNNNNKS NKPTRTNFVY SDMPPGSSVT CVISPDDEYH HHHHLQQQQL LVFGQVENVS  180
VPAVDYADFS QFSINNGGGS GGGEFALQQY YNPNYNAHME ESYRCDSNNA TSTELPPLPE  240
DITSSGNFYY YSEESNNEGA QFPATTAISS VSDHMGYSSS NSTSLLNEMM PMSFGTNDYE  300
YQYGVTCGVL GGGSTVTTTS ESYNGFGFDD CLQPLQYCSS NIMQDESTNS TLGYWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1775122351ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488142.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1S4BH190.0A0A1S4BH19_TOBAC; ethylene-responsive transcription factor LEP-like
STRINGXP_009773564.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-24ERF family protein