PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488133.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 302aa    MW: 32930.2 Da    PI: 6.3676
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.75.6e-333993155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  XP_016488133.1 39 KPRLRWTADLHERFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 93
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-313694IPR009057Homeodomain-like
PROSITE profilePS512949.6143696IPR017930Myb domain
TIGRFAMsTIGR015571.2E-233993IPR006447Myb domain, plants
SuperFamilySSF466892.51E-163995IPR009057Homeodomain-like
PfamPF002497.7E-84192IPR001005SANT/Myb domain
PfamPF143792.3E-16123168IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MFPRLIQPQG EDEYNMNVGI HHTHNINGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG  60
GPSKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGLTATYS LESPCSGGTP QQLPASDLNE  120
GYEVKEALRA QMEVQSKLHL QVEAEKHLQI RQDAEQRYIS MLEKACKMLA DQFIGGVVTE  180
NDQETCQGLG TRTQVSPLCN PLGLCPSESA DLVGIHGPEE VSPRIHPQFT DCSTESCLTS  240
HESPAGLPLE GTSPGGRKRG PNGDSTHASV VWGEADMISS GVRLLQVNRF GITSSNVQNV  300
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-193999158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-193999158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-193999158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-193999158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7180360.0AJ718036.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT23-3-460, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620525.10.0PREDICTED: protein PHR1-LIKE 3-like isoform X2
RefseqXP_016488133.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X2
TrEMBLA0A1S4BGY20.0A0A1S4BGY2_TOBAC; protein PHR1-LIKE 1-like isoform X2
STRINGXP_009620524.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-64G2-like family protein