PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488110.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92562 Da    PI: 5.9415
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-191977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_016488110.1 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    5679*****************************************************97 PP
2START177.76.8e-561643722205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     laee+++e+++ka+ ++  Wv+++ +++g++++ + + s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s+g  g+++l 
  XP_016488110.1 164 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGITAISHSCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGsgGTIELL 257
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+  Ry+  +++g++v++++S++++q+ p+    +++vRaellpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_016488110.1 258 YMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQNFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 352
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++  ++t++a+l+++++
  XP_016488110.1 353 ESSTVLSQRTTMAALRHLRQ 372
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-19977IPR009057Homeodomain-like
PROSITE profilePS5007115.7751478IPR001356Homeobox domain
SMARTSM003891.2E-151682IPR001356Homeobox domain
SuperFamilySSF466895.99E-171880IPR009057Homeodomain-like
CDDcd000861.26E-161979No hitNo description
PfamPF000461.6E-162077IPR001356Homeobox domain
CDDcd146862.38E-671110No hitNo description
PROSITE profilePS5084826.27154382IPR002913START domain
CDDcd088756.10E-79158373No hitNo description
SMARTSM002343.0E-39163373IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-23163369IPR023393START-like domain
SuperFamilySSF559611.17E-36164374No hitNo description
PfamPF018525.1E-53164372IPR002913START domain
PfamPF086701.9E-50698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MMAVTSACKD SKMGMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSFFR  120
QQTQTAALTT TDNNSCESVV TSGQQNLSAQ RPPRDASPAG LLSLAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGITA ISHSCSGVAS RACGLVGLEP TRVAEILKDR PSWFRDCRAV  240
DVLNVMSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPVQNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLSQ  360
RTTMAALRHL RQISQEISHP TVTGWGRRPA ALRALGQRLS KGFNEAVNGF TDEGWSMLES  420
DGIDDVTLLV NSSPSKLMGA NISYANGFPS MSSAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSIPVTRTGC FGGQIILPLA HTIEHEEFME VIRLESIGHY  540
QDDMIMPGDI FLLQLCSGVD ENAVGTCAEL VFAPIDASFA DDAPLLPSGF RIIPLDSKAD  600
ASSPNRTLDL ASTLEVGPAG SRPNGDYSKN SSSTKSVMTI AFQFAFEIHL QENIAAMARQ  660
YIRSIISSVQ RVALALSPSR LGSLPGLRSP PGTPEAQTLA RWICQSYRFF LGVELLKSVS  720
GGSESVLKEI WHHSDALMCC SLKALPVFTF ANEAGLDMLE TTLVSLQDIT LEKIFDDNGR  780
KALFSELPQI MQQGFACLQG GICLSSMGRP ISYERAIAWK VLNEEEDPHC ICFMFVNWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781184.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1U7X2S90.0A0A1U7X2S9_NICSY; homeobox-leucine zipper protein ATHB-15-like
STRINGXP_009781184.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]