PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487974.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 267aa    MW: 30454 Da    PI: 6.8893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.8e-163482355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +g+WvAeI+d       +  r +lg++ taeeAa a+++a+  l+g
  XP_016487974.1 34 FVGVRQRH-SGKWVAEIKDtT-----KeIRMWLGTYETAEEAAHAYDQAAVLLRG 82
                    78*****9.7*********43.....35**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.68E-283389No hitNo description
Gene3DG3DSA:3.30.730.102.8E-273390IPR001471AP2/ERF domain
PROSITE profilePS5103219.0723390IPR001471AP2/ERF domain
SMARTSM003802.7E-323396IPR001471AP2/ERF domain
PRINTSPR003671.2E-63445IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-183491IPR016177DNA-binding domain
PfamPF008471.0E-103478IPR001471AP2/ERF domain
PRINTSPR003671.2E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEINFQKRQQ TEANSKNKLA KLKGKRRSKS RNNFVGVRQR HSGKWVAEIK DTTKEIRMWL  60
GTYETAEEAA HAYDQAAVLL RGSNTRTNFV TRVSQDSPLA SRIRNLLNSK KIAKQKCLDY  120
TVQSSLKISS SSSLIISNCD DSISSENTHT QLSFDQEIKE ESQLFHNTYI PDIDMGTSAY  180
SSFSSSYFSS LQPELSWGFG EGFEFAQELL DIPKNVISAE MGLTEYEIMK VERQISASLY  240
AVNGVRDYME SVHDHYESLW DHPLSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-143393263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-74HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763628.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016487974.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY881e-74ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A1S4BGH20.0A0A1S4BGH2_TOBAC; ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1U7VB840.0A0A1U7VB84_NICSY; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009763628.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-23related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]