PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 41825.8 Da PI: 6.6795 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.9 | 3.5e-48 | 57 | 182 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ppG+rF P+deel+ +yLkk+v +++l+ + ikev++yk+ P++L + +ekewyfF++rd+ky++g+r+nra+ +gyWkatg dk++++ XP_016487930.1 57 PPGYRFCPQDEELIIHYLKKRVMNERLPH-DKIKEVNLYKYSPQQLSeNYSMLGEKEWYFFTPRDRKYPNGNRPNRAAGKGYWKATGADKPIKH- 149 9**************************99.88**************8444445899**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg +k Lvfy+g+ pkg kt+W+mhe+r+ XP_016487930.1 150 NDVKVGFRKALVFYEGKPPKGDKTNWIMHEFRV 182 999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-57 | 48 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 56 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-25 | 57 | 182 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEFDEQTKAN SQNPKIQELE KQKQVEDEKG LIIVKQNYNM ISEISRVNYV DDSFVFPPGY 60 RFCPQDEELI IHYLKKRVMN ERLPHDKIKE VNLYKYSPQQ LSENYSMLGE KEWYFFTPRD 120 RKYPNGNRPN RAAGKGYWKA TGADKPIKHN DVKVGFRKAL VFYEGKPPKG DKTNWIMHEF 180 RVNESRRLKR HAQDMRLDDW VLCRIYKKVD KSFKNARKEH EQDDTSISCS SIGKVENCDY 240 EGITDSYEIA RQNLKLPHHY DITFDDPGFN MDYNKYSIDN FSHFGPRSNY GIPLQPSFSP 300 GNIFWDQKGY QENCNILPMH FDVNNFYQDS YDEIQSQNIL DSVLDENSSI YKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-58 | 56 | 208 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321). {ECO:0000269|PubMed:17124321}. | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603097.2 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_016487930.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | A0SPJ4 | 3e-62 | NAMB1_TRIDC; NAC transcription factor NAM-B1 | ||||
Swissprot | K4BNG7 | 2e-62 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1S4BGD0 | 0.0 | A0A1S4BGD0_TOBAC; NAC transcription factor 29-like | ||||
STRING | XP_009759087.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-64 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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