PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487753.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 339aa    MW: 38722.6 Da    PI: 7.3618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l ++++++G g+W++ ++  g++R++k+c++rw +yl
   XP_016487753.1 14 KGPWTPEEDQKLTNYINKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.65.9e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w++yl
   XP_016487753.1  67 RGKFSQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTYL 112
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.399961IPR017930Myb domain
SuperFamilySSF466898.07E-3211108IPR009057Homeodomain-like
SMARTSM007171.7E-151363IPR001005SANT/Myb domain
PfamPF002492.5E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-251568IPR009057Homeodomain-like
CDDcd001679.05E-121661No hitNo description
PROSITE profilePS5129427.28662116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002497.0E-1767112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2769117IPR009057Homeodomain-like
CDDcd001676.38E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRSPSSDEN GLKKGPWTPE EDQKLTNYIN KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHAVLGNKWS AIATHLPGRT DNEIKNFWNT YLKKKLIQMG  120
YDPMTHRPRT DIFNSLQHLI ALANLKELME HQYLQNLLQP RNISFNTSIQ DIEAYNLLNS  180
ISSLKDSQFL GTNNHLENHL ISTPNSSLQA IQDLIPFSHL PELQTSCSFQ NSLNKDKVRP  240
QNTDFITVLN HGETLSPTSP WLPSSLSSSP PRPSLTNDLT RKENSSEVVI SSCLLEERKL  300
PDYLFQSDSE RSLSNEGAPT FIWPDLLLED SFFQDIPKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755179e-56HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774352.10.0PREDICTED: myb-related protein 330-like
RefseqXP_016487753.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9SBF31e-101MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1S4BFX50.0A0A1S4BFX5_TOBAC; myb-related protein 330-like
TrEMBLA0A1U7W2S00.0A0A1U7W2S0_NICSY; myb-related protein 330-like
STRINGXP_009774352.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.15e-99myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]