PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016487724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 349aa MW: 39251.9 Da PI: 5.4132 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 134 | 185 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++++k+L+ XP_016487724.1 134 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 185 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.23E-11 | 132 | 189 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-16 | 133 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.723 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-12 | 134 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-8 | 139 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MALETVIYPQ ESFGYSCKEY YIPANLSNYN YELGFLQGEE EMTFTSLLDT GNYDSNNNRE 60 SSSSPVMYNN NEKEYSWDPN YSSIEDSPNV NQLLMEASPA MMEPPPPARA ATVSGRRKRR 120 RTRSCKNKEE LENQRMTHIA VERNRRKQMN EYLAVIRSLM PPSYVQRGDQ ASIIGGAINF 180 VKELEHHLQT LEAQKITHSQ QQQQQQSDCH GSLSTPLFAD YFSFPQYSTH SNHSNSSTPA 240 DAAAATTCDS PLAAEKQLAL AEIEVTMAES HANLKILSKR RPKQLLKMVA GLQCLWLTVL 300 HLNVTTVDHM VLYSLSLKLE EGCQLTTADE IADAVNQLLG RIQEEAASS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 116 | 120 | RKRRR |
2 | 116 | 121 | RKRRRT |
3 | 134 | 145 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487724.1 | 0.0 | PREDICTED: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 7e-94 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1S4BFQ7 | 0.0 | A0A1S4BFQ7_TOBAC; transcription factor bHLH96-like | ||||
STRING | XP_009615601.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1996 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-88 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|