PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487673.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 197aa    MW: 22860.3 Da    PI: 9.7319
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-19363257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+++t++ql +L++l++k  r+p+ ++ ++++++l    +++ ++V++WFqN++a++++
  XP_016487673.1  3 RPRWSPTPQQLMILQDLYRKgLRNPTSSQVQKITAHLslfgKIQCKNVFYWFQNHKARDRQ 63
                    89*****************99*************************************996 PP

2Wus_type_Homeobox1071.1e-34264264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +r+RW+Ptp+Q++iL++ly++Glr+P+++++q+ita+L+ +Gki+ kNVfyWFQN+kaR+rqk
     XP_016487673.1  2 PRPRWSPTPQQLMILQDLYRKGLRNPTSSQVQKITAHLSLFGKIQCKNVFYWFQNHKARDRQK 64
                       579***********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.819164IPR001356Homeobox domain
SMARTSM003891.7E-7168IPR001356Homeobox domain
CDDcd000863.02E-6264No hitNo description
SuperFamilySSF466898.98E-11364IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-8363IPR009057Homeodomain-like
PfamPF000461.2E-16363IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITAHLS LFGKIQCKNV FYWFQNHKAR  60
DRQKLRKQLL HQMEKTPTED NDNQLPLLIN NTNTNDVVHF VENYPSFPPN VHTFYPHSPT  120
ILLHQTEGKE TSSAQMMNNV GKVDLRLTEN DMMKMNVQGW VLMMTDNMGQ NSIPCCSNVR  180
PIETLQLFPV KATGVKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754506e-65HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755236e-65HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487673.11e-147PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1S4BFQ51e-145A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like
STRINGXP_009626933.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-31WOX family protein