PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487654.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 658aa    MW: 75261.7 Da    PI: 6.302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.91.6e-5661331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yLk+k++gkk+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v 
  XP_016487654.1   6 LPPGFRFHPTDEELVAYYLKRKINGKKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 
                     79****************************.99***************6434555777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s + + vg+kktLv+y+grap+g +tdWvmheyrl
  XP_016487654.1 100 S-QMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                     *.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-624155IPR003441NAC domain
PROSITE profilePS5100561.0616156IPR003441NAC domain
PfamPF023655.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING KKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKRSLNG PKTGDVHYAS DRSSSIEIYS  180
EGRCEKYHDM EIRSHDYAMP SSSSSSMAVH GSPMNVATPT PTPSDDMWNM QYLSNEAFSF  240
NNSTAHPIPN YGTLPYPPSK VNIALECARL QHRFALPPLE IQDFPQVGYV DNKMPQSSFL  300
QSTNQTDIVE EILSVAQLAS QNLINQDSSW GGNSCAPVDD FSFLPPNNNR IHDLGSFHFI  360
EQLKEDQNVR SPDIGDFGED FKSDRMVENL RWIGMSDGDL EKTFLEDYKT VPIENVSAVQ  420
REENQFQGED SGHYNSLNGF NETDTNNFSI GFGNDNLFDD GDMTDGLSNS SSFEMYEKIE  480
VNHGFFIATR QAAKTFYHQV TPSTTLRIHR NLVTVHDFPL YIGKISDSTS IIPKERTFLD  540
NFIKKVTRPW TTTMRTLAGM IALLHTFFWI CFGGCLDEKG SKFEAKRGVS VNGECLMERE  600
EKKKAQEFKW YCYKQNKFSI PGKEEEKYCN VAVEKKWPYL TLVVALSTIW LHHIVPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-54213311140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265093e-60AC226509.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0144P17, complete sequence.
GenBankHG9754413e-60HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755143e-60HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487654.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A1S4BFI30.0A0A1S4BFI3_TOBAC; NAC domain-containing protein 86-like
STRINGXP_009790763.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-142NAC domain containing protein 28