PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 51085.6 Da PI: 6.94 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.7 | 9.3e-36 | 50 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ e+L++kv +kk + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_016487616.1 50 LPAGVKFDPTDQELI-EHLEAKVVSKKeskshplI---DefipTIEGEdGICYTHPEKLP-GVTKDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 139 799************.9999999888856665443...143334766646**********.555667799******************7333455 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_016487616.1 140 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 5544778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 16 | No hit | No description |
SuperFamily | SSF101941 | 4.05E-39 | 46 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.55 | 50 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-16 | 51 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MNKSSSSHQL GSISSCDLID AKLEEHQLCG SKQCPGCGQK LDGKPDWVGL PAGVKFDPTD 60 QELIEHLEAK VVSKKESKSH PLIDEFIPTI EGEDGICYTH PEKLPGVTKD GLSRHFFHRP 120 SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGQNEEER EGELVVSKIF YQTQPRQCNT TTWSNNERSI NTGDHSGSGS 240 CSSSKEINNI NPNSHSHRDE LSAVAVGVAM SSNYNTFNIQ QLKADHFSFL PFRKNFDEAG 300 IMDADASMAS EAAAPAGTCE EPESQRQHPH HVTNEPSHQH HHHHQNQIAT SAAFNISRPS 360 PPLSAIIAPP PPLHHTSVIL DHDSFHVPRN YNFQQQQQQQ HHKLGARSAS GLEELIMGCT 420 SSTDIKEESS LTNPQEADWL KYSSFWPDPE NTDHHE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487615.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like isoform X1 | ||||
Refseq | XP_016487616.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-177 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1S4BFE1 | 0.0 | A0A1S4BFE1_TOBAC; NAC domain-containing protein 82-like isoform X1 | ||||
STRING | XP_009789697.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-159 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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