PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487492.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 687aa    MW: 78604.7 Da    PI: 5.9459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.5e-23161261198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt+sd  ++  l++ +k a+++       ++k   +++l+++d++g++W++k+ ++++++r++lt+GW  Fv +++L +gD vvF   +++
  XP_016487492.1 161 FCKALTTSDIKSNWGLSVHRKDANKCfppldmaQEK--PTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWGAFVTSKKLLAGDLVVFL--RDE 251
                     99****************************964433..4459************************************************..569 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++r
  XP_016487492.1 252 TGKLHVGIRR 261
                     999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-35154273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-27156263IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-19160261No hitNo description
SMARTSM010191.9E-16161263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59161263IPR003340B3 DNA binding domain
PfamPF023627.4E-20161261IPR003340B3 DNA binding domain
PfamPF065073.6E-5286347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MLCVGKYGGH VLVHCWMFPS LGREFTTSPE FTWISWSNHP IWNGFKDYNC PIFPERYYVG  60
FFIFVFWCFF LGVREDKMRE ASIRWFGHVK RRGTDAPVRR CERLALEGQR RGEAGRRSIG  120
VEHDTEEVYA ETILLPNQEQ NEPSTPEFCP LEPPRPQYQS FCKALTTSDI KSNWGLSVHR  180
KDANKCFPPL DMAQEKPTQE LIVNDLQGNE WRFKHVFQGQ PRRHLLTNGW GAFVTSKKLL  240
AGDLVVFLRD ETGKLHVGIR RLSYQCNSVG SSTFSRQSME GVLAVASHAF ATRSLFSVYY  300
KPCHNRSSQF IMSLSNYFEG GNHGPGVGTI SRTQQSSLDS HVKRTSGMDQ MSFPQGQHMT  360
NLLLEEDQYM QDSEAISISA RPTMMPLEIE QQSVESLNNI HHIEDNVLQP HTAVARENNE  420
GFIPNETVAI QAQDENFDEL FKETDFPDFV NTSLDTITLD WDSDLRSTIQ DFDEWLEEQE  480
ETNPPGLQTC SEDHSRQTSS ILEQPTSSQV MSISSTPSRI PYKGPGRGDE QVPWGRYQVA  540
RRCLPILNRV VSRYPDSLVN FKVASSIFQS LHLEILAELV YFLDNLTVMN LSKDQFNVAG  600
QHLWDLKLSG IELGWLEKRL AHIDGAFSME NLLQRRQAVT LRMGETLATF RQLDEELGRI  660
NKELHELSLK VGPNPPMRFH PVLEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-6112134784310Auxin response factor 1
4ldw_A3e-6112134784310Auxin response factor 1
4ldw_B3e-6112134784310Auxin response factor 1
4ldx_A4e-6112134784310Auxin response factor 1
4ldx_B4e-6112134784310Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0846690.0AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764975.10.0PREDICTED: uncharacterized protein LOC104216589 isoform X1
RefseqXP_009764976.10.0PREDICTED: uncharacterized protein LOC104216589 isoform X1
RefseqXP_009764977.10.0PREDICTED: uncharacterized protein LOC104216589 isoform X1
RefseqXP_016487492.10.0PREDICTED: uncharacterized protein LOC107807599 isoform X1
RefseqXP_016487493.10.0PREDICTED: uncharacterized protein LOC107807599 isoform X1
RefseqXP_016487494.10.0PREDICTED: uncharacterized protein LOC107807599 isoform X1
TrEMBLA0A1S4BF250.0A0A1S4BF25_TOBAC; Auxin response factor
TrEMBLA0A1U7VAB80.0A0A1U7VAB8_NICSY; Auxin response factor
STRINGXP_009764975.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1459378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.14e-66auxin response factor 11