PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487432.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 465aa    MW: 51520 Da    PI: 7.5404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.2e-18329428198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++  +  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v F++++  +++
  XP_016487432.1 329 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVAFSRID-PGGK 421
                     99**************************556666778***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_016487432.1 422 LVMGFRK 428
                     8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-29326432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-21326429IPR015300DNA-binding pseudobarrel domain
CDDcd100175.42E-24327428No hitNo description
SMARTSM010193.7E-21329429IPR003340B3 DNA binding domain
PfamPF023626.3E-16329428IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096329430IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGSMICMNEV CRKTTSSEWR KGWSLKSGGF ANLCYNCGSA FENLTFCETF HMGDSGWREC  60
KKCGKHLHCG CIASKYLFEY LDFGGVGCIS CTRRFDGHSM RPMQVPADDF RNNTFGTNFI  120
QPLHVEKGVD ETNFEEGRLP TVNNITEISE PGQPFQSQKD ENNVSLGKTK QEKLLPVGDV  180
STCFSNLNQQ SIASLFREQD NSKPNQGVKE MYDTTNQPSL DFSLSTPVGC SSPGLSFPGG  240
GVEGREHEKT PPFQQGLRMR HILLKPPKPS PSFGSDSNKE LPSQTRIARP PAEGRGGRNQ  300
LLPRYWPRIT DQELRQLSGD LKSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPINQ  360
SDGLPIRIQD IKGKEWTFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDT VAFSRIDPGG  420
KLVMGFRKAT NSVETQDPQS SYLPDGSGSA DTSFTGLTEN LNVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-703074362131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487424.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
RefseqXP_016487432.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
SwissprotQ6Z3U31e-137Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S4BF000.0A0A1S4BF00_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X1
STRINGXP_009771757.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-120high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]